Software

I release most of my code on GitHub.

Software packages

• wiggleplotr - R package to visualise RNA-seq and ATAC-seq/ChIP-seq read coverage in genomic regions. Supports shrinking long introns to fixed length in order to highlight differences in exonic read coverage. Based on ggplot2.

Analysis code

• Blood_ATAC - Re-analysis of ATAC-seq data from different blood cell types using Snakemake.