The most up-to-date list of my publications is in Google Scholar. Below is a list of some selected publications.


  1. Jones, W., Alasoo, K., Fishman, D. and Parts, L., 2017. Computational biology: deep learning. Emerging Topics in Life Sciences, 1(3), pp.257-274.
  2. Kilpinen, H., Goncalves, A., Leha, A., Afzal, V., Alasoo, K., Ashford, S., Bala, S., Bensaddek, D., Casale, F.P., Culley, O.J. and Danecek, P., 2017. Common genetic variation drives molecular heterogeneity in human iPSCs. Nature, 546(7658), pp.370-375.
  3. Alasoo, K., Rodrigues, J., Mukhopadhyay, S., Knights, A.J., Mann, A.L., Kundu, K., HIPSCI Consortium, Hale, C, Dougan, G., Gaffney, D.J., 2017. Shared genetic effects on chromatin and gene expression reveal widespread enhancer priming in immune response. bioRxiv, p.102392.
  4. Schwartzentruber, J., Foskolou, S., Kilpinen, H., Rodrigues, J., Alasoo, K., Knights, A.J., Patel, M., Goncalves, A., Ferreira, R., Benn, C.L. and Wilbrey, A., 2017. Molecular and functional variation in iPSC-derived sensory neurons. bioRxiv, p.095943.


  1. Alasoo, K., Martinez, F.O., Hale, C., Gordon, S., Powrie, F., Dougan, G., Mukhopadhyay, S. and Gaffney, D.J., 2015. Transcriptional profiling of macrophages derived from monocytes and iPS cells identifies a conserved response to LPS and novel alternative transcription. Scientific reports, 5, p.12524.